Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c11_mean_counts_contribs float

liu2026Multiomics_Liver_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c11_mean_counts_contribs [-0.0389, 0.218]
n
121,424,702
mean
0.000146
sd
0.00342

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1214247023.78% 120485228
chr1 12052878 4.84% 11958632
chr2 9208475 3.80% 9135872
chr3 7781905 3.92% 7719918
chr4 5008401 2.63% 4965049
chr5 5948147 3.28% 5900827
chr6 7363461 4.31% 7305357
chr7 6062313 3.80% 6015443
chr8 4870758 3.36% 4832167
chr9 5201148 3.76% 5160751
chr10 5619249 4.20% 5575147
chr11 6254168 4.63% 6207058
chr12 6070608 4.55% 6022589
chr13 2608246 2.28% 2587565
chr14 4054480 3.79% 4023422
chr15 3827754 3.75% 3798642
chr16 4544411 5.03% 4511350
chr17 6150294 7.39% 6105543
chr18 2315069 2.88% 2295902
chr19 5741343 9.79% 5702082
chr20 3358525 5.21% 3333365
chr21 1461468 3.13% 1450465
chr22 3069697 6.04% 3047836
chrX 2780794 1.78% 2759677
chrY 71110 0.12% 70569
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120485228 1 959 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c11__mean_counts_contribs.bw 745.49 MB f10c695c0fa0d961334ad971440c3898
genomic_resource.yaml 1.31 KB 10a86b33f8d2c97a41c4ac8266fb8f7a
statistics/