Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c12_mean_counts_contribs float

liu2026Multiomics_Liver_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c12_mean_counts_contribs [-0.0729, 0.336]
n
144,247,224
mean
0.000228
sd
0.00391

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1442472244.49% 143149401
chr1 14292733 5.74% 14183421
chr2 11210454 4.63% 11123335
chr3 9577243 4.83% 9501743
chr4 6256435 3.29% 6203740
chr5 7252621 4.00% 7196028
chr6 8565260 5.01% 8498928
chr7 7536659 4.73% 7478479
chr8 6117701 4.22% 6070126
chr9 5968177 4.31% 5923577
chr10 6737655 5.04% 6686110
chr11 7596413 5.62% 7540956
chr12 7055916 5.29% 7002430
chr13 3481892 3.04% 3454296
chr14 4670871 4.36% 4635524
chr15 4677028 4.59% 4641034
chr16 5053293 5.59% 5017740
chr17 6697913 8.04% 6650199
chr18 2995602 3.73% 2971083
chr19 6035201 10.30% 5994749
chr20 3851495 5.98% 3823241
chr21 1532572 3.28% 1520921
chr22 3212912 6.32% 3189990
chrX 3790644 2.43% 3761835
chrY 80534 0.14% 79916
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 143149401 1 988 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c12__mean_counts_contribs.bw 886.34 MB ffb4f48536bc3828fa80aeadb837e9d2
genomic_resource.yaml 1.31 KB dc7bccf68846a492f25a193ea3d37777
statistics/