Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c12/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c12
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c12_mean_pred_corrected float

liu2026Multiomics_Liver_c12_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c12_mean_pred_corrected [0.00163, 12.7]
n
74,597,331
mean
0.0959
sd
0.208

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 745973312.32% 74597311
chr1 7394948 2.97% 7394947
chr2 5765473 2.38% 5765473
chr3 4940209 2.49% 4940207
chr4 3215809 1.69% 3215809
chr5 3728561 2.05% 3728559
chr6 4432466 2.60% 4432464
chr7 3874882 2.43% 3874880
chr8 3138544 2.16% 3138543
chr9 3093153 2.24% 3093153
chr10 3489101 2.61% 3489099
chr11 3937526 2.91% 3937525
chr12 3662505 2.75% 3662504
chr13 1789129 1.56% 1789129
chr14 2412755 2.25% 2412755
chr15 2407104 2.36% 2407103
chr16 2630152 2.91% 2630152
chr17 3500750 4.20% 3500749
chr18 1537058 1.91% 1537058
chr19 3217997 5.49% 3217996
chr20 1986272 3.08% 1986272
chr21 791521 1.69% 791520
chr22 1652294 3.25% 1652294
chrX 1956025 1.25% 1956023
chrY 43097 0.08% 43097
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74597311 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c12__mean_pred_corrected.bw 566.19 MB 7bb74f35a58cd2c69d087f2ef7acf0e3
genomic_resource.yaml 1.28 KB daa986d111a4167e824e76755125d03d
statistics/