Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c13_mean_counts_contribs float

liu2026Multiomics_Liver_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c13_mean_counts_contribs [-0.119, 0.231]
n
146,583,502
mean
0.000242
sd
0.00406

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1465835024.57% 145498302
chr1 14675528 5.89% 14567831
chr2 11223909 4.63% 11139436
chr3 9652814 4.87% 9580224
chr4 6405795 3.37% 6354619
chr5 7579551 4.18% 7522298
chr6 8754444 5.13% 8688842
chr7 7409135 4.65% 7353576
chr8 6229365 4.29% 6182494
chr9 6125962 4.43% 6081226
chr10 7094904 5.30% 7042324
chr11 7616804 5.64% 7562139
chr12 7096097 5.32% 7043336
chr13 3486349 3.05% 3459440
chr14 4696861 4.39% 4662329
chr15 4805267 4.71% 4770071
chr16 5204504 5.76% 5167545
chr17 6784713 8.15% 6736073
chr18 3278697 4.08% 3253174
chr19 5849281 9.98% 5809915
chr20 3961468 6.15% 3932921
chr21 1529267 3.27% 1517547
chr22 3297091 6.49% 3274462
chrX 3757607 2.41% 3729713
chrY 68089 0.12% 66767
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145498302 1 922 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c13__mean_counts_contribs.bw 900.99 MB a576f27e75a178ce775806611586a0ea
genomic_resource.yaml 1.31 KB b6412e6588f7d8231bc9b93e3b0e09e1
statistics/