Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c13/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c13
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c13_mean_pred_corrected float

liu2026Multiomics_Liver_c13_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c13_mean_pred_corrected [0.000947, 10.5]
n
75,857,918
mean
0.0879
sd
0.192

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 758579182.36% 75857895
chr1 7613625 3.06% 7613624
chr2 5787510 2.39% 5787510
chr3 4983055 2.51% 4983053
chr4 3302873 1.74% 3302871
chr5 3913443 2.16% 3913440
chr6 4544749 2.66% 4544749
chr7 3818279 2.40% 3818278
chr8 3200509 2.21% 3200507
chr9 3165074 2.29% 3165074
chr10 3671118 2.74% 3671114
chr11 3952744 2.93% 3952744
chr12 3669883 2.75% 3669881
chr13 1791316 1.57% 1791315
chr14 2434022 2.27% 2434021
chr15 2480781 2.43% 2480781
chr16 2695402 2.98% 2695401
chr17 3542111 4.25% 3542111
chr18 1681366 2.09% 1681366
chr19 3095814 5.28% 3095812
chr20 2042388 3.17% 2042388
chr21 792906 1.70% 792906
chr22 1710108 3.37% 1710108
chrX 1932799 1.24% 1932798
chrY 36043 0.06% 36043
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75857895 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c13__mean_pred_corrected.bw 576.79 MB 81873c69271e8609796d2ce3fbe715ab
genomic_resource.yaml 1.28 KB 018a31014a8b331f13b6a23f7f5837ac
statistics/