Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c2_mean_counts_contribs float

liu2026Multiomics_Liver_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c2_mean_counts_contribs [-0.104, 0.572]
n
149,703,057
mean
0.000331
sd
0.00526

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1497030574.66% 148912454
chr1 15289344 6.14% 15208258
chr2 11316839 4.67% 11255826
chr3 9648603 4.87% 9596512
chr4 6145568 3.23% 6109707
chr5 7441390 4.10% 7401494
chr6 8897400 5.21% 8849784
chr7 7604404 4.77% 7564269
chr8 6100297 4.20% 6067466
chr9 6408624 4.63% 6375523
chr10 6846951 5.12% 6809233
chr11 7834522 5.80% 7794604
chr12 7348368 5.51% 7309812
chr13 3279013 2.87% 3260782
chr14 4942951 4.62% 4916405
chr15 4844990 4.75% 4818773
chr16 5504902 6.09% 5477743
chr17 7310568 8.78% 7273889
chr18 2893409 3.60% 2876114
chr19 6673898 11.39% 6643074
chr20 4119733 6.39% 4098857
chr21 1599592 3.42% 1591263
chr22 3655903 7.19% 3638518
chrX 3826965 2.45% 3806667
chrY 168823 0.30% 167881
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148912454 1 1002 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c2__mean_counts_contribs.bw 920.04 MB 707d3d4c42565238f2f718c049bb22a6
genomic_resource.yaml 1.31 KB f24202fa46e40896abf50f7f6462b3aa
statistics/