Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c2/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c2
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c2_mean_pred_corrected float

liu2026Multiomics_Liver_c2_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Liver_c2_mean_pred_corrected [0.000862, 162]
n
79,517,232
mean
0.62
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 795172322.48% 79517203
chr1 8147364 3.27% 8147362
chr2 6000398 2.48% 6000396
chr3 5122466 2.58% 5122465
chr4 3248214 1.71% 3248212
chr5 3940487 2.17% 3940484
chr6 4737491 2.77% 4737491
chr7 4020929 2.52% 4020927
chr8 3220211 2.22% 3220211
chr9 3398637 2.46% 3398637
chr10 3628993 2.71% 3628993
chr11 4170724 3.09% 4170721
chr12 3915806 2.94% 3915805
chr13 1728717 1.51% 1728717
chr14 2632517 2.46% 2632515
chr15 2556109 2.51% 2556109
chr16 2914888 3.23% 2914886
chr17 3922934 4.71% 3922931
chr18 1521973 1.89% 1521973
chr19 3599533 6.14% 3599530
chr20 2170048 3.37% 2170048
chr21 846364 1.81% 846364
chr22 1941111 3.82% 1941111
chrX 2041794 1.31% 2041791
chrY 89524 0.16% 89524
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79517203 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c2__mean_pred_corrected.bw 605.23 MB 732d894fa12d98878ce3922979b4c90c
genomic_resource.yaml 1.27 KB 1fe6b8fbc4500e5e7704c3b1412f6e1e
statistics/