Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c3_mean_counts_contribs float

liu2026Multiomics_Liver_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c3_mean_counts_contribs [-0.144, 0.374]
n
259,620,058
mean
0.00045
sd
0.00524

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2596200588.09% 258283895
chr1 25084313 10.08% 24955539
chr2 20671248 8.54% 20564498
chr3 17556487 8.85% 17465494
chr4 11914707 6.26% 11850156
chr5 13804762 7.60% 13733544
chr6 15458703 9.05% 15379455
chr7 13120176 8.23% 13053137
chr8 11502797 7.93% 11443977
chr9 11076238 8.00% 11020872
chr10 12626779 9.44% 12560495
chr11 12842969 9.51% 12778901
chr12 12700916 9.53% 12635608
chr13 6374588 5.57% 6341159
chr14 8397523 7.84% 8354338
chr15 8414473 8.25% 8371376
chr16 8943998 9.90% 8900361
chr17 10955411 13.16% 10899479
chr18 6071682 7.55% 6038658
chr19 8827670 15.06% 8785293
chr20 6924768 10.75% 6890366
chr21 2774765 5.94% 2758897
chr22 5592458 11.00% 5566013
chrX 7537380 4.83% 7497240
chrY 445247 0.78% 439039
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 258283895 1 2511 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c3__mean_counts_contribs.bw 1.56 GB 3d8bf31b1226306634398b96ad55c4c9
genomic_resource.yaml 1.31 KB 08bf1d7f3c3bc1e70b63c51635c237d6
statistics/