Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c3_mean_pred_corrected float

liu2026Multiomics_Liver_c3_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c3_mean_pred_corrected [0.000342, 114]
n
140,581,733
mean
0.577
sd
1.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1405817334.38% 140579989
chr1 13648034 5.48% 13648016
chr2 11168408 4.61% 11168397
chr3 9458197 4.77% 9458186
chr4 6407550 3.37% 6407540
chr5 7432233 4.09% 7432231
chr6 8377952 4.90% 8377944
chr7 7080844 4.44% 7080838
chr8 6181024 4.26% 6181016
chr9 6009094 4.34% 6009089
chr10 6841395 5.11% 6841388
chr11 6984505 5.17% 6984497
chr12 6864068 5.15% 6864059
chr13 3419136 2.99% 3419133
chr14 4557282 4.26% 4557275
chr15 4546265 4.46% 4546260
chr16 4870837 5.39% 4870831
chr17 6013043 7.22% 6013039
chr18 3260912 4.06% 3260911
chr19 4886029 8.34% 4886026
chr20 3746643 5.81% 3746641
chr21 1497631 3.21% 1497628
chr22 3055090 6.01% 3055087
chrX 4038785 2.59% 4038781
chrY 236776 0.41% 235176
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140579989 1 1308 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c3__mean_pred_corrected.bw 1.04 GB de7a690695ca98a5d874e0fdc5a262b7
genomic_resource.yaml 1.27 KB 9373c2a3208d024491e16627a61c7828
statistics/