Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c4_mean_counts_contribs float

liu2026Multiomics_Liver_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c4_mean_counts_contribs [-0.125, 0.294]
n
223,105,112
mean
0.000422
sd
0.00507

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2231051126.95% 221827092
chr1 21748506 8.74% 21623392
chr2 17587308 7.26% 17486035
chr3 14869843 7.50% 14784216
chr4 10327055 5.43% 10264231
chr5 11985024 6.60% 11915742
chr6 13230762 7.75% 13154968
chr7 11404219 7.16% 11339088
chr8 9814825 6.76% 9758037
chr9 9404617 6.80% 9350981
chr10 11002107 8.22% 10938866
chr11 11139533 8.25% 11077377
chr12 10975922 8.24% 10913107
chr13 5549005 4.85% 5516365
chr14 7137846 6.67% 7097586
chr15 7204504 7.06% 7163170
chr16 7571947 8.38% 7530611
chr17 9357717 11.24% 9305850
chr18 5308895 6.61% 5276360
chr19 7559869 12.90% 7519429
chr20 6008187 9.32% 5975417
chr21 2334750 5.00% 2320619
chr22 4686739 9.22% 4661683
chrX 6545188 4.19% 6506671
chrY 350744 0.61% 347291
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 221827092 1 1397 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c4__mean_counts_contribs.bw 1.34 GB a838f1946594f0637613144546d42b70
genomic_resource.yaml 1.31 KB 53f745306038a6f23f2a9b1ef11bcddb
statistics/