Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c4_mean_pred_corrected float

liu2026Multiomics_Liver_c4_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c4_mean_pred_corrected [0.000791, 29.6]
n
118,251,494
mean
0.242
sd
0.561

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1182514943.68% 118251194
chr1 11569432 4.65% 11569428
chr2 9289212 3.84% 9289202
chr3 7873396 3.97% 7873391
chr4 5441397 2.86% 5441393
chr5 6322646 3.48% 6322641
chr6 7031682 4.12% 7031677
chr7 6017290 3.78% 6017287
chr8 5154285 3.55% 5154281
chr9 4979448 3.60% 4979445
chr10 5830550 4.36% 5830542
chr11 5923816 4.39% 5923812
chr12 5807654 4.36% 5807650
chr13 2917122 2.55% 2917119
chr14 3792528 3.54% 3792527
chr15 3809673 3.74% 3809667
chr16 4030727 4.46% 4030724
chr17 5024022 6.03% 5024021
chr18 2784190 3.46% 2784189
chr19 4101199 7.00% 4101194
chr20 3185508 4.94% 3185507
chr21 1235556 2.65% 1235556
chr22 2504100 4.93% 2504099
chrX 3442478 2.21% 3442478
chrY 183583 0.32% 183364
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 118251194 1 169 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c4__mean_pred_corrected.bw 898.56 MB c66ea3742b2accd60667f84e6dae60a9
genomic_resource.yaml 1.27 KB b7d5e95ba26f2edd7be253d31a6b26d3
statistics/