Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c5_mean_counts_contribs float

liu2026Multiomics_Liver_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c5_mean_counts_contribs [-0.0803, 0.457]
n
193,303,886
mean
0.000344
sd
0.00515

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1933038866.02% 192324262
chr1 19054135 7.65% 18957512
chr2 15393762 6.36% 15315531
chr3 12970283 6.54% 12903501
chr4 8575881 4.51% 8529469
chr5 10061859 5.54% 10010741
chr6 11700934 6.85% 11641964
chr7 10159586 6.38% 10108143
chr8 8371649 5.77% 8329039
chr9 8103763 5.86% 8062011
chr10 8737039 6.53% 8692044
chr11 9767764 7.23% 9720346
chr12 9615476 7.21% 9567784
chr13 4652020 4.07% 4627531
chr14 6280325 5.87% 6249175
chr15 5985603 5.87% 5955084
chr16 6543173 7.24% 6512402
chr17 8829074 10.60% 8783888
chr18 3975768 4.95% 3953560
chr19 7581452 12.93% 7547454
chr20 5075860 7.88% 5051265
chr21 2237442 4.79% 2225232
chr22 4123779 8.11% 4104106
chrX 5314119 3.41% 5286898
chrY 193140 0.34% 189582
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 192324262 1 2587 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c5__mean_counts_contribs.bw 1.16 GB 5dc6a9519063adbf9d0d03d746a00124
genomic_resource.yaml 1.31 KB a431e5320be5adc31017332cff00475c
statistics/