Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c6_mean_counts_contribs float

liu2026Multiomics_Liver_c6_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c6_mean_counts_contribs [-0.0973, 0.45]
n
205,879,665
mean
0.000376
sd
0.0049

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2058796656.42% 204819245
chr1 20371398 8.18% 20266360
chr2 16029624 6.62% 15947242
chr3 13684599 6.90% 13613151
chr4 9136328 4.80% 9085712
chr5 10697350 5.89% 10642326
chr6 12156045 7.12% 12093147
chr7 10526527 6.61% 10472048
chr8 8920785 6.15% 8874525
chr9 8794641 6.35% 8749656
chr10 9898360 7.40% 9846346
chr11 10313586 7.63% 10263144
chr12 10155436 7.62% 10103333
chr13 4890428 4.28% 4864558
chr14 6736291 6.29% 6702038
chr15 6645751 6.52% 6611313
chr16 7190434 7.96% 7155405
chr17 9178131 11.02% 9132432
chr18 4609664 5.74% 4584167
chr19 7633741 13.02% 7597757
chr20 5552964 8.62% 5525557
chr21 2160332 4.62% 2148581
chr22 4576197 9.00% 4554757
chrX 5838274 3.74% 5807199
chrY 182779 0.32% 178491
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 204819245 1 2525 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c6__mean_counts_contribs.bw 1.24 GB bfeeb227eaddcd3c6cb81bb9f88537ca
genomic_resource.yaml 1.31 KB 306b288182bfedab19489e03ce986500
statistics/