Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c7_mean_counts_contribs float

liu2026Multiomics_Liver_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c7_mean_counts_contribs [-0.0822, 0.406]
n
210,976,386
mean
0.000402
sd
0.00477

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2109763866.57% 209797017
chr1 20433508 8.21% 20318742
chr2 16825651 6.95% 16730847
chr3 14113474 7.12% 14033516
chr4 9130237 4.80% 9075602
chr5 11264772 6.21% 11201395
chr6 12907735 7.56% 12835894
chr7 10682369 6.70% 10622120
chr8 9012828 6.21% 8962415
chr9 9052956 6.54% 9002293
chr10 10418520 7.79% 10359919
chr11 10886915 8.06% 10828198
chr12 10420009 7.82% 10361857
chr13 4798295 4.20% 4770872
chr14 6806956 6.36% 6769546
chr15 6887819 6.75% 6849812
chr16 7223735 8.00% 7185356
chr17 9964117 11.97% 9911218
chr18 4404256 5.48% 4377967
chr19 7901394 13.48% 7860422
chr20 5700913 8.85% 5669366
chr21 2447695 5.24% 2433221
chr22 4349582 8.56% 4326829
chrX 5241749 3.36% 5211797
chrY 100901 0.18% 97813
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 209797017 1 2499 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c7__mean_counts_contribs.bw 1.27 GB ddce59806bb347c2c4fa9ecf2fb3f78d
genomic_resource.yaml 1.31 KB 6c24bb99e4ef73d5ed6219ad2a79aa61
statistics/