Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c7/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Liver for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c7
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c7_mean_pred_corrected float

liu2026Multiomics_Liver_c7_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Liver_c7_mean_pred_corrected [0.0027, 42]
n
111,953,869
mean
0.244
sd
0.633

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1119538693.49% 111952444
chr1 10875782 4.37% 10875777
chr2 8895981 3.67% 8895972
chr3 7463268 3.76% 7463260
chr4 4802524 2.52% 4802521
chr5 5949135 3.28% 5949129
chr6 6856020 4.01% 6856015
chr7 5610235 3.52% 5610230
chr8 4767949 3.29% 4767945
chr9 4802191 3.47% 4802184
chr10 5532122 4.13% 5532116
chr11 5792452 4.29% 5792448
chr12 5530692 4.15% 5530688
chr13 2533680 2.22% 2533676
chr14 3618419 3.38% 3618415
chr15 3627725 3.56% 3627723
chr16 3835229 4.25% 3835226
chr17 5369248 6.45% 5369244
chr18 2329174 2.90% 2329171
chr19 4289493 7.32% 4289491
chr20 3029888 4.70% 3029886
chr21 1302913 2.79% 1302913
chr22 2318870 4.56% 2318870
chrX 2767837 1.77% 2767837
chrY 53042 0.09% 51707
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111952444 1 546 1 1
global segment-length histogram

Files

Filename Size md5
Liver_c7__mean_pred_corrected.bw 849.72 MB 41aa02aa0bff1ffb584acfc1fc51f31f
genomic_resource.yaml 1.27 KB f21fcd0b4c93531ad835238210ad3eab
statistics/