Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c8_mean_counts_contribs float

liu2026Multiomics_Liver_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c8_mean_counts_contribs [-0.0817, 0.458]
n
152,498,952
mean
0.000233
sd
0.00408

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1524989524.75% 151477069
chr1 15447774 6.21% 15344881
chr2 11724192 4.84% 11643899
chr3 9943699 5.01% 9875068
chr4 6502035 3.42% 6454770
chr5 7756392 4.27% 7704151
chr6 9084717 5.32% 9023401
chr7 7658756 4.81% 7607354
chr8 6436454 4.43% 6392439
chr9 6493865 4.69% 6451005
chr10 7124400 5.32% 7076032
chr11 7793293 5.77% 7743173
chr12 7430396 5.58% 7380667
chr13 3496356 3.06% 3472018
chr14 4936537 4.61% 4903701
chr15 4866577 4.77% 4834399
chr16 5529004 6.12% 5493871
chr17 7185387 8.63% 7139203
chr18 3251352 4.05% 3227590
chr19 6331527 10.80% 6293654
chr20 4165984 6.46% 4139168
chr21 1579631 3.38% 1569083
chr22 3563500 7.01% 3541345
chrX 4045682 2.59% 4018772
chrY 151442 0.26% 147425
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 151477069 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c8__mean_counts_contribs.bw 936.8 MB d15d0393251df495f2e5ce50c3432146
genomic_resource.yaml 1.31 KB 031bbd580585fe397ab128033b348dcb
statistics/