Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Liver/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Liver for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Liver_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Liver
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Liver_c9_mean_counts_contribs float

liu2026Multiomics_Liver_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Liver_c9_mean_counts_contribs [-0.0695, 0.335]
n
197,166,387
mean
0.000286
sd
0.00383

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1971663876.14% 195798184
chr1 19154714 7.69% 19022150
chr2 15326647 6.33% 15218810
chr3 12836758 6.47% 12745293
chr4 8931219 4.70% 8863931
chr5 10611771 5.85% 10537138
chr6 11831984 6.93% 11748049
chr7 10062318 6.31% 9992482
chr8 8923249 6.15% 8860068
chr9 8426820 6.09% 8369158
chr10 9938254 7.43% 9868968
chr11 10138363 7.51% 10070492
chr12 9497010 7.13% 9430904
chr13 4848576 4.24% 4813499
chr14 6234726 5.82% 6191490
chr15 6550443 6.42% 6504926
chr16 6850195 7.58% 6806417
chr17 8950480 10.75% 8892377
chr18 4457738 5.55% 4423804
chr19 7188492 12.26% 7145250
chr20 5267048 8.17% 5231807
chr21 2162923 4.63% 2147266
chr22 4188572 8.24% 4162296
chrX 4641926 2.97% 4609398
chrY 146161 0.26% 142211
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 195798184 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Liver_c9__mean_counts_contribs.bw 1.18 GB d13ca82731d47540abe97fd62e3ebd3b
genomic_resource.yaml 1.31 KB 92d00d2736337fb6301016acb8e7b884
statistics/