Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c1_mean_counts_contribs float

liu2026Multiomics_Lung_c1_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Lung_c1_mean_counts_contribs [-0.141, 0.242]
n
346,780,892
mean
0.000301
sd
0.00386

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 34678089210.81% 344731764
chr1 31046606 12.47% 30865053
chr2 29149303 12.04% 28976808
chr3 23238704 11.72% 23099703
chr4 17663565 9.29% 17554114
chr5 19794530 10.90% 19675977
chr6 21110525 12.36% 20986332
chr7 18396797 11.55% 18287031
chr8 16169757 11.14% 16073846
chr9 14956144 10.81% 14867789
chr10 17720319 13.24% 17615023
chr11 17681979 13.09% 17580465
chr12 16546748 12.42% 16449369
chr13 10009123 8.75% 9948190
chr14 10632909 9.93% 10570702
chr15 10911808 10.70% 10847625
chr16 10998549 12.17% 10935858
chr17 13955147 16.76% 13875856
chr18 8535919 10.62% 8483302
chr19 9878512 16.85% 9823998
chr20 9088985 14.10% 9036816
chr21 4287942 9.18% 4261790
chr22 6509880 12.81% 6473899
chrX 8328545 5.34% 8277981
chrY 168596 0.29% 164237
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 344731764 1 2535 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c1__mean_counts_contribs.bw 2.08 GB ecfaf3e7b8ad5a803a48ab808c8f4ea9
genomic_resource.yaml 1.3 KB c642adffcd1dd810aeae4fe829844414
statistics/