Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c10_mean_counts_contribs float

liu2026Multiomics_Lung_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c10_mean_counts_contribs [-0.0914, 0.322]
n
193,114,517
mean
0.000338
sd
0.00493

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1931145176.02% 192040996
chr1 18195795 7.31% 18095717
chr2 15688641 6.48% 15600950
chr3 12397926 6.25% 12327151
chr4 9333649 4.91% 9279101
chr5 10218095 5.63% 10160343
chr6 11557618 6.77% 11493287
chr7 10058067 6.31% 10001654
chr8 8430259 5.81% 8383211
chr9 8312612 6.01% 8267163
chr10 9296713 6.95% 9244057
chr11 10157215 7.52% 10102143
chr12 9128761 6.85% 9078101
chr13 5029807 4.40% 5001141
chr14 6284723 5.87% 6250090
chr15 6308075 6.18% 6272665
chr16 6485121 7.18% 6450683
chr17 8555504 10.28% 8508695
chr18 4249214 5.29% 4224355
chr19 7007792 11.96% 6971730
chr20 5079222 7.88% 5051984
chr21 2323491 4.97% 2310332
chr22 4017626 7.91% 3996560
chrX 4851553 3.11% 4824515
chrY 147038 0.26% 145368
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 192040996 1 996 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c10__mean_counts_contribs.bw 1.16 GB 46cedbe7826255db2b43af6709a54ef2
genomic_resource.yaml 1.31 KB 19b576266381633e90f44d6ea410346c
statistics/