Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c11_mean_counts_contribs float

liu2026Multiomics_Lung_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c11_mean_counts_contribs [-0.0646, 0.189]
n
226,093,972
mean
0.000304
sd
0.0038

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2260939727.04% 224586167
chr1 20884425 8.39% 20745768
chr2 18686906 7.72% 18559818
chr3 14725395 7.43% 14623719
chr4 10878273 5.72% 10800339
chr5 12422454 6.84% 12337302
chr6 13618207 7.97% 13526126
chr7 11775886 7.39% 11695956
chr8 10374317 7.15% 10303615
chr9 9756826 7.05% 9692534
chr10 11400299 8.52% 11324889
chr11 11870784 8.79% 11793867
chr12 10953737 8.22% 10880394
chr13 6073879 5.31% 6031319
chr14 7015829 6.55% 6969224
chr15 7233422 7.09% 7185500
chr16 7624874 8.44% 7577545
chr17 9738936 11.70% 9678594
chr18 5108543 6.36% 5073503
chr19 7398138 12.62% 7354745
chr20 5987351 9.29% 5948615
chr21 2761432 5.91% 2742538
chr22 4529523 8.91% 4502011
chrX 5215162 3.34% 5180082
chrY 59374 0.10% 58164
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 224586167 1 923 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c11__mean_counts_contribs.bw 1.36 GB 9b819bf9a6b577195e39b553ee01db12
genomic_resource.yaml 1.31 KB f83c50856e0fcb2cff9352b4348ee974
statistics/