Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c12_mean_counts_contribs float

liu2026Multiomics_Lung_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c12_mean_counts_contribs [-0.0603, 0.168]
n
203,743,993
mean
0.000255
sd
0.00372

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2037439936.35% 202317785
chr1 18985965 7.63% 18854367
chr2 16521258 6.82% 16403819
chr3 13327309 6.72% 13232078
chr4 9416526 4.95% 9346438
chr5 10977583 6.05% 10898970
chr6 12292495 7.20% 12205641
chr7 10548646 6.62% 10473982
chr8 8961115 6.17% 8897465
chr9 8809878 6.37% 8749038
chr10 10190671 7.62% 10120152
chr11 10754059 7.96% 10680250
chr12 9872576 7.41% 9803012
chr13 5135385 4.49% 5098123
chr14 6444280 6.02% 6399716
chr15 6601483 6.47% 6554869
chr16 6908129 7.65% 6861706
chr17 9415222 11.31% 9352296
chr18 4367621 5.43% 4334568
chr19 7473076 12.75% 7426133
chr20 5439263 8.44% 5402294
chr21 2457326 5.26% 2439825
chr22 4143455 8.15% 4116281
chrX 4641965 2.97% 4609286
chrY 58707 0.10% 57476
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 202317785 1 955 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c12__mean_counts_contribs.bw 1.22 GB c4962ed9c1207a2ef6f8079dfe549b65
genomic_resource.yaml 1.31 KB 2bf0317b20aa97cf234b94ec9cea0bf6
statistics/