Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c13_mean_counts_contribs float

liu2026Multiomics_Lung_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c13_mean_counts_contribs [-0.063, 0.155]
n
115,485,673
mean
0.000188
sd
0.00369

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1154856733.60% 114648793
chr1 11296919 4.54% 11215150
chr2 9031231 3.73% 8964684
chr3 6885549 3.47% 6834451
chr4 4734519 2.49% 4697699
chr5 6026343 3.32% 5981870
chr6 6434979 3.77% 6387772
chr7 5577487 3.50% 5536500
chr8 4831373 3.33% 4795705
chr9 5131035 3.71% 5094481
chr10 5638852 4.21% 5597635
chr11 6460195 4.78% 6414552
chr12 5557941 4.17% 5517517
chr13 2593703 2.27% 2574225
chr14 3599182 3.36% 3573459
chr15 3921469 3.84% 3892598
chr16 4320991 4.78% 4291673
chr17 6007891 7.22% 5965639
chr18 2341640 2.91% 2324166
chr19 5292750 9.03% 5257682
chr20 3304531 5.13% 3281068
chr21 1346848 2.88% 1336689
chr22 2588128 5.09% 2570374
chrX 2503978 1.60% 2485427
chrY 58139 0.10% 57777
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114648793 1 898 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c13__mean_counts_contribs.bw 710.59 MB d348e21d119a259adf345402f5bcb2b9
genomic_resource.yaml 1.31 KB 113651f9b8646c96d3bd314c78fbe5ba
statistics/