Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c14_mean_counts_contribs float

liu2026Multiomics_Lung_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c14_mean_counts_contribs [-0.0583, 0.206]
n
209,201,309
mean
0.000245
sd
0.00374

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2092013096.52% 207704817
chr1 19364720 7.78% 19227319
chr2 17239176 7.12% 17113674
chr3 13540581 6.83% 13441238
chr4 9962415 5.24% 9885653
chr5 11231794 6.19% 11149079
chr6 12514848 7.33% 12423690
chr7 11092861 6.96% 11012525
chr8 9460455 6.52% 9391491
chr9 9036180 6.53% 8972579
chr10 10447251 7.81% 10371996
chr11 10987160 8.13% 10910808
chr12 9972319 7.48% 9900363
chr13 5700579 4.98% 5658110
chr14 6471605 6.05% 6425721
chr15 6703630 6.57% 6656243
chr16 7099776 7.86% 7052178
chr17 9071713 10.90% 9011408
chr18 4805777 5.98% 4768884
chr19 7179082 12.25% 7133448
chr20 5666844 8.79% 5627631
chr21 2513572 5.38% 2495183
chr22 4275283 8.41% 4247338
chrX 4795666 3.07% 4761496
chrY 68022 0.12% 66762
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 207704817 1 995 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c14__mean_counts_contribs.bw 1.26 GB 91d6e0152cb65215d6a04504b4b22e07
genomic_resource.yaml 1.31 KB 14c502b2e30fddc821a9ab9d64d2b18a
statistics/