Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c15_mean_counts_contribs float

liu2026Multiomics_Lung_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c15_mean_counts_contribs [-0.0539, 0.228]
n
191,249,605
mean
0.000249
sd
0.00388

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1912496055.96% 189935273
chr1 17945183 7.21% 17823665
chr2 15619426 6.45% 15509898
chr3 12514288 6.31% 12425953
chr4 9115533 4.79% 9048151
chr5 10169233 5.60% 10097718
chr6 11457400 6.71% 11376920
chr7 9831486 6.17% 9762396
chr8 8549591 5.89% 8489732
chr9 8308518 6.00% 8251433
chr10 9503566 7.10% 9437802
chr11 10141219 7.51% 10073047
chr12 9033144 6.78% 8970601
chr13 4893347 4.28% 4858224
chr14 6102890 5.70% 6061016
chr15 6154890 6.03% 6113194
chr16 6595449 7.30% 6552934
chr17 8498912 10.21% 8444034
chr18 4240441 5.28% 4210908
chr19 6802449 11.60% 6761569
chr20 5051839 7.84% 5018219
chr21 2330490 4.99% 2314059
chr22 3900214 7.67% 3875417
chrX 4401133 2.82% 4370785
chrY 88964 0.16% 87598
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 189935273 1 986 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c15__mean_counts_contribs.bw 1.15 GB cfdcaf51568bf84224a39fd9e3f64e23
genomic_resource.yaml 1.31 KB 274945932c2abf1b5ccbdfd69d87b2b8
statistics/