Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c16/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c16
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c16_mean_counts_contribs float

liu2026Multiomics_Lung_c16_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c16_mean_counts_contribs [-0.0302, 0.0897]
n
109,853,935
mean
5.07e-05
sd
0.00274

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1098539353.42% 108795638
chr1 10505497 4.22% 10404729
chr2 8792981 3.63% 8706001
chr3 7047981 3.55% 6977969
chr4 5097823 2.68% 5046124
chr5 5754798 3.17% 5697942
chr6 6502524 3.81% 6439126
chr7 5670225 3.56% 5615055
chr8 4763919 3.28% 4716966
chr9 4653775 3.36% 4609664
chr10 5292570 3.96% 5241252
chr11 5874319 4.35% 5818340
chr12 5263453 3.95% 5212167
chr13 2760716 2.41% 2732968
chr14 3411206 3.19% 3378619
chr15 3581529 3.51% 3547543
chr16 3874236 4.29% 3838772
chr17 5086151 6.11% 5040073
chr18 2327584 2.90% 2304332
chr19 4532045 7.73% 4493204
chr20 2894331 4.49% 2866833
chr21 1269356 2.72% 1256653
chr22 2272036 4.47% 2251303
chrX 2578495 1.65% 2554012
chrY 46385 0.08% 45991
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108795638 1 716 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c16__mean_counts_contribs.bw 674.56 MB 62db16551fa46e4bf20f8c025c34cbe9
genomic_resource.yaml 1.31 KB 9f2ee7d54398cc3e75942f99b36bb988
statistics/