Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c17_mean_counts_contribs float

liu2026Multiomics_Lung_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c17_mean_counts_contribs [-0.0274, 0.0779]
n
87,128,922
mean
9.62e-06
sd
0.00269

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 871289222.71% 86320535
chr1 8400314 3.37% 8322242
chr2 6708309 2.77% 6644816
chr3 5461503 2.75% 5409578
chr4 3796999 2.00% 3759813
chr5 4354082 2.40% 4312793
chr6 5033845 2.95% 4986328
chr7 4462702 2.80% 4420774
chr8 3621584 2.50% 3587520
chr9 3786741 2.74% 3751668
chr10 4229384 3.16% 4189932
chr11 4739560 3.51% 4696253
chr12 4256101 3.19% 4215926
chr13 1993901 1.74% 1974904
chr14 2732957 2.55% 2707701
chr15 2910597 2.85% 2883640
chr16 3260263 3.61% 3231495
chr17 4427296 5.32% 4388160
chr18 1697332 2.11% 1681080
chr19 4029637 6.87% 3996094
chr20 2277544 3.53% 2256878
chr21 988670 2.12% 978965
chr22 1895392 3.73% 1878481
chrX 2038378 1.31% 2019830
chrY 25831 0.05% 25664
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86320535 1 848 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c17__mean_counts_contribs.bw 534.97 MB a177b4bf068713ce9d4dc257ca7d02f6
genomic_resource.yaml 1.31 KB 7a436496296b0c7b2b94f73b7de0e8db
statistics/