Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c17/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Lung for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c17
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c17_mean_pred_corrected float

liu2026Multiomics_Lung_c17_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Lung_c17_mean_pred_corrected [0.000284, 2.88]
n
44,011,739
mean
0.0379
sd
0.0638

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 440117391.37% 44011729
chr1 4251028 1.71% 4251027
chr2 3376534 1.39% 3376532
chr3 2748660 1.39% 2748660
chr4 1909213 1.00% 1909212
chr5 2191855 1.21% 2191855
chr6 2552993 1.49% 2552993
chr7 2243111 1.41% 2243110
chr8 1820251 1.25% 1820250
chr9 1899271 1.37% 1899271
chr10 2132578 1.59% 2132577
chr11 2405476 1.78% 2405476
chr12 2152242 1.61% 2152242
chr13 1006300 0.88% 1006300
chr14 1384764 1.29% 1384763
chr15 1465302 1.44% 1465302
chr16 1647410 1.82% 1647410
chr17 2253956 2.71% 2253956
chr18 851467 1.06% 851467
chr19 2082654 3.55% 2082653
chr20 1144051 1.78% 1144051
chr21 498751 1.07% 498750
chr22 948276 1.87% 948276
chrX 1031477 0.66% 1031477
chrY 14119 0.02% 14119
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44011729 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Lung_c17__mean_pred_corrected.bw 334.47 MB f6889b8d81e0ab9222e5f1e042bedab4
genomic_resource.yaml 1.27 KB 894a8057652ba58adc54e97b8b63c6bd
statistics/