Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c2_mean_counts_contribs float

liu2026Multiomics_Lung_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c2_mean_counts_contribs [-0.0765, 0.227]
n
335,235,668
mean
0.000345
sd
0.00408

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 33523566810.45% 333253295
chr1 30187880 12.13% 30011814
chr2 28153110 11.62% 27984706
chr3 22184536 11.19% 22051315
chr4 16844250 8.86% 16738364
chr5 18726950 10.32% 18613890
chr6 20216438 11.84% 20096417
chr7 17681018 11.10% 17574929
chr8 15443884 10.64% 15351529
chr9 14396102 10.40% 14311529
chr10 17149493 12.82% 17048284
chr11 17328056 12.83% 17228306
chr12 16190207 12.15% 16094669
chr13 9430587 8.25% 9372943
chr14 10303388 9.63% 10243245
chr15 10726871 10.52% 10664303
chr16 10905807 12.07% 10843819
chr17 13755295 16.52% 13677108
chr18 8232022 10.24% 8180740
chr19 9746375 16.63% 9693571
chr20 8881507 13.78% 8830409
chr21 4085728 8.75% 4061506
chr22 6400458 12.59% 6365849
chrX 8145741 5.22% 8095644
chrY 119965 0.21% 118406
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 333253295 1 977 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c2__mean_counts_contribs.bw 2.02 GB cbb10e9151ac000f63a3070cfef32c7f
genomic_resource.yaml 1.3 KB 3d5d158ef739d889668a5d7b8e26ffa9
statistics/