Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c3_mean_counts_contribs float

liu2026Multiomics_Lung_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c3_mean_counts_contribs [-0.0748, 0.28]
n
337,697,879
mean
0.000342
sd
0.0041

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 33769787910.52% 335833048
chr1 30538990 12.27% 30371778
chr2 28236784 11.66% 28080317
chr3 22698034 11.45% 22570676
chr4 16998053 8.94% 16898909
chr5 18709129 10.31% 18604458
chr6 20535911 12.02% 20422175
chr7 17769307 11.15% 17669696
chr8 15599386 10.75% 15512135
chr9 14593996 10.55% 14513635
chr10 17288448 12.92% 17192508
chr11 17335508 12.83% 17242699
chr12 15995792 12.00% 15906980
chr13 9547207 8.35% 9492874
chr14 10486126 9.80% 10429106
chr15 10733346 10.52% 10674430
chr16 10956382 12.13% 10898540
chr17 13798670 16.57% 13725600
chr18 8176142 10.17% 8128625
chr19 9830245 16.77% 9779872
chr20 8781477 13.63% 8734420
chr21 4216251 9.03% 4192345
chr22 6433036 12.66% 6400034
chrX 8278032 5.31% 8231328
chrY 161627 0.28% 159908
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 335833048 1 985 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c3__mean_counts_contribs.bw 2.03 GB 3e00ca06436678303881b98eeaab0047
genomic_resource.yaml 1.3 KB 9450e936c3103e1830cf5656664fc936
statistics/