Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c4_mean_counts_contribs float

liu2026Multiomics_Lung_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c4_mean_counts_contribs [-0.0831, 0.198]
n
256,494,696
mean
0.000331
sd
0.00401

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2564946967.99% 254935678
chr1 23489711 9.44% 23348018
chr2 21165144 8.74% 21036368
chr3 16979058 8.56% 16873992
chr4 12449718 6.55% 12369682
chr5 14185785 7.81% 14098961
chr6 15431254 9.03% 15337697
chr7 13244015 8.31% 13161743
chr8 11722198 8.08% 11649912
chr9 11191375 8.09% 11123423
chr10 13138219 9.82% 13058651
chr11 13397238 9.92% 13317758
chr12 12198521 9.15% 12123968
chr13 6967288 6.09% 6923968
chr14 7967701 7.44% 7920168
chr15 8317617 8.16% 8267546
chr16 8350210 9.24% 8301253
chr17 10989474 13.20% 10926220
chr18 6133905 7.63% 6094417
chr19 7904725 13.49% 7860634
chr20 6920333 10.74% 6879656
chr21 3110128 6.66% 3091096
chr22 4940308 9.72% 4912463
chrX 6208499 3.98% 6169719
chrY 92272 0.16% 88365
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 254935678 1 2604 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c4__mean_counts_contribs.bw 1.54 GB e848e913ceade0ef374cc035052e343f
genomic_resource.yaml 1.3 KB fddbd9d6d82b10c1c6e5014a159d4041
statistics/