Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c5_mean_counts_contribs float

liu2026Multiomics_Lung_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c5_mean_counts_contribs [-0.0826, 0.217]
n
280,320,624
mean
0.000301
sd
0.00403

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2803206248.73% 278650078
chr1 25345690 10.18% 25195984
chr2 23370360 9.65% 23230721
chr3 18775560 9.47% 18661479
chr4 14413181 7.58% 14322395
chr5 15786256 8.70% 15690859
chr6 17029257 9.97% 16927775
chr7 14806408 9.29% 14717557
chr8 12938866 8.91% 12860878
chr9 12183098 8.80% 12110970
chr10 14167885 10.59% 14083458
chr11 14430485 10.68% 14347092
chr12 13446287 10.09% 13365913
chr13 8062628 7.05% 8013014
chr14 8702871 8.13% 8651509
chr15 8843180 8.67% 8790823
chr16 8806357 9.75% 8755655
chr17 11363229 13.65% 11299090
chr18 6749107 8.40% 6706923
chr19 8180524 13.96% 8136050
chr20 7134202 11.07% 7092921
chr21 3400491 7.28% 3379379
chr22 5144613 10.12% 5115840
chrX 7063847 4.53% 7021522
chrY 176242 0.31% 172271
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 278650078 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c5__mean_counts_contribs.bw 1.69 GB 885630472c6d603717611170cf4a3179
genomic_resource.yaml 1.3 KB 2a9911e3e7ed8f9bc96a9532695edd6d
statistics/