Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Lung/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Lung for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Lung_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Lung
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Lung_c9_mean_counts_contribs float

liu2026Multiomics_Lung_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Lung_c9_mean_counts_contribs [-0.0724, 0.231]
n
247,314,264
mean
0.00029
sd
0.00398

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2473142647.71% 245785389
chr1 22733552 9.13% 22594649
chr2 20537159 8.48% 20408673
chr3 16590804 8.37% 16486511
chr4 12512006 6.58% 12429672
chr5 13831597 7.62% 13744412
chr6 14990285 8.78% 14896952
chr7 13028699 8.18% 12947726
chr8 11213898 7.73% 11143960
chr9 10707460 7.74% 10641201
chr10 12379502 9.25% 12303726
chr11 12831902 9.50% 12754820
chr12 11802728 8.86% 11729566
chr13 6894018 6.03% 6849943
chr14 7750818 7.24% 7703381
chr15 7890160 7.74% 7841876
chr16 7834008 8.67% 7787495
chr17 10133782 12.17% 10074881
chr18 5892248 7.33% 5853673
chr19 7532683 12.85% 7490438
chr20 6309132 9.79% 6271516
chr21 2929953 6.27% 2911646
chr22 4619925 9.09% 4593459
chrX 6276438 4.02% 6237158
chrY 91507 0.16% 88055
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 245785389 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Lung_c9__mean_counts_contribs.bw 1.49 GB 28b667ce29e3c7694eb3922a708856f5
genomic_resource.yaml 1.3 KB 056eb9529328e4e4e0ae455ee90371bc
statistics/