Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c0_mean_counts_contribs float

liu2026Multiomics_Muscle_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c0_mean_counts_contribs [-0.101, 0.264]
n
258,113,943
mean
0.000368
sd
0.00422

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2581139438.04% 256765745
chr1 24116840 9.69% 23991651
chr2 21872299 9.03% 21757545
chr3 16915213 8.53% 16825380
chr4 12655663 6.65% 12585865
chr5 13854997 7.63% 13782428
chr6 15258940 8.93% 15178718
chr7 13267335 8.33% 13196314
chr8 11871372 8.18% 11809042
chr9 11366329 8.21% 11308104
chr10 13276982 9.92% 13207060
chr11 13396580 9.92% 13328781
chr12 12067432 9.05% 12004567
chr13 6792437 5.94% 6755869
chr14 8156935 7.62% 8114243
chr15 8444611 8.28% 8400469
chr16 8265709 9.15% 8224702
chr17 11070024 13.30% 11014866
chr18 5440705 6.77% 5410133
chr19 8186383 13.97% 8146838
chr20 6866522 10.65% 6831993
chr21 3192803 6.84% 3175605
chr22 5218555 10.27% 5192787
chrX 6508306 4.17% 6474180
chrY 50971 0.09% 48605
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 256765745 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c0__mean_counts_contribs.bw 1.55 GB ca17fb878da52c2d0256f99ed68e1745
genomic_resource.yaml 1.31 KB 0585f45823288058cdfeb6497d309cd8
statistics/