Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c1_mean_counts_contribs float

liu2026Multiomics_Muscle_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c1_mean_counts_contribs [-0.103, 0.201]
n
281,598,485
mean
0.000308
sd
0.00363

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2815984858.77% 279746850
chr1 25878363 10.39% 25710108
chr2 23848860 9.85% 23690526
chr3 18800138 9.48% 18673437
chr4 13859913 7.29% 13762644
chr5 15808404 8.71% 15702134
chr6 17313936 10.14% 17198363
chr7 14821583 9.30% 14721443
chr8 13348215 9.20% 13257910
chr9 12165583 8.79% 12086648
chr10 14351424 10.73% 14256791
chr11 14643945 10.84% 14549496
chr12 13529200 10.15% 13440778
chr13 7565915 6.62% 7514220
chr14 8644826 8.08% 8588616
chr15 8946547 8.77% 8888188
chr16 8964340 9.92% 8909175
chr17 11623186 13.96% 11551558
chr18 6356606 7.91% 6312394
chr19 8716950 14.87% 8666059
chr20 7386585 11.46% 7339893
chr21 3395998 7.27% 3372578
chr22 5332725 10.49% 5300120
chrX 6267313 4.02% 6225990
chrY 27930 0.05% 27781
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 279746850 1 989 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c1__mean_counts_contribs.bw 1.69 GB 95a9f2aedf1f34c967bf5cab688faa0a
genomic_resource.yaml 1.31 KB eccb6e38e2331c1e2dd33e793a0783c6
statistics/