Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c10_mean_counts_contribs float

liu2026Multiomics_Muscle_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c10_mean_counts_contribs [-0.0353, 0.1]
n
112,470,890
mean
0.00011
sd
0.0028

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1124708903.50% 111459179
chr1 10802974 4.34% 10706545
chr2 9230118 3.81% 9145179
chr3 7123429 3.59% 7057718
chr4 5210076 2.74% 5159759
chr5 5868475 3.23% 5814448
chr6 6731380 3.94% 6669195
chr7 5822302 3.65% 5769116
chr8 4920830 3.39% 4875805
chr9 4810062 3.48% 4767522
chr10 5583347 4.17% 5532406
chr11 6101111 4.52% 6047389
chr12 5461603 4.10% 5412465
chr13 2736649 2.39% 2711327
chr14 3518622 3.29% 3487506
chr15 3623721 3.55% 3591037
chr16 3699382 4.10% 3668376
chr17 5141469 6.18% 5097511
chr18 2249473 2.80% 2227947
chr19 4557559 7.78% 4520703
chr20 2976616 4.62% 2950891
chr21 1281420 2.74% 1269842
chr22 2282263 4.49% 2262935
chrX 2713145 1.74% 2688903
chrY 24864 0.04% 24654
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111459179 1 939 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c10__mean_counts_contribs.bw 690.75 MB c48b9e4dba858fe44e60d2249ed34b63
genomic_resource.yaml 1.32 KB 0e4c223d7758bf3e4d2e6cb9535aa18f
statistics/