Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c11_mean_counts_contribs float

liu2026Multiomics_Muscle_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c11_mean_counts_contribs [-0.0296, 0.0761]
n
100,492,824
mean
3.19e-05
sd
0.00268

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1004928243.13% 99463938
chr1 9609104 3.86% 9511460
chr2 7808391 3.22% 7727305
chr3 6490128 3.27% 6422004
chr4 4594942 2.42% 4545519
chr5 5302810 2.92% 5247241
chr6 5957278 3.49% 5895529
chr7 5185248 3.25% 5131090
chr8 4308051 2.97% 4262933
chr9 4325957 3.13% 4282453
chr10 4670884 3.49% 4622244
chr11 5496264 4.07% 5440663
chr12 4923695 3.69% 4873219
chr13 2500662 2.19% 2474190
chr14 3073560 2.87% 3042269
chr15 3228358 3.17% 3195124
chr16 3581275 3.96% 3546594
chr17 4765379 5.72% 4718795
chr18 2126692 2.65% 2104500
chr19 4312060 7.36% 4272129
chr20 2640333 4.10% 2613753
chr21 1126489 2.41% 1114139
chr22 2110330 4.15% 2089520
chrX 2354934 1.51% 2331265
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99463938 1 716 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c11__mean_counts_contribs.bw 616.94 MB 187662981f3a926dd9bc8c6d7b8f1b3b
genomic_resource.yaml 1.32 KB 47a7f3ff8f564ea4fc726524f35da587
statistics/