Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c12_mean_counts_contribs float

liu2026Multiomics_Muscle_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c12_mean_counts_contribs [-0.024, 0.0634]
n
53,372,417
mean
3.66e-05
sd
0.00245

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 533724171.66% 52834734
chr1 5291154 2.13% 5237536
chr2 4023182 1.66% 3981997
chr3 3278099 1.65% 3244219
chr4 2006959 1.06% 1985201
chr5 2732994 1.51% 2704698
chr6 3043076 1.78% 3012468
chr7 2584080 1.62% 2557938
chr8 2120785 1.46% 2099105
chr9 2345620 1.69% 2321956
chr10 2536331 1.90% 2510234
chr11 2975024 2.20% 2945096
chr12 2649365 1.99% 2622805
chr13 1112111 0.97% 1100768
chr14 1714156 1.60% 1697032
chr15 1734343 1.70% 1716733
chr16 1967463 2.18% 1948607
chr17 2888141 3.47% 2860349
chr18 957465 1.19% 947783
chr19 3140514 5.36% 3111242
chr20 1422135 2.21% 1407753
chr21 545305 1.17% 539945
chr22 1127284 2.22% 1115987
chrX 1163727 0.75% 1152304
chrY 13104 0.02% 12978
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52834734 1 916 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c12__mean_counts_contribs.bw 327.58 MB ae2996266cde6443df12c1aa2f035cfa
genomic_resource.yaml 1.32 KB 348252d2b51e673d434e4f97ec72b8c3
statistics/