Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c13_mean_counts_contribs float

liu2026Multiomics_Muscle_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c13_mean_counts_contribs [-0.0532, 0.175]
n
155,407,985
mean
0.000206
sd
0.0033

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1554079854.84% 154185964
chr1 14822894 5.95% 14706787
chr2 12586596 5.20% 12486556
chr3 9907435 5.00% 9827988
chr4 7148183 3.76% 7089262
chr5 8463868 4.66% 8396376
chr6 9666148 5.66% 9589543
chr7 7738226 4.86% 7676542
chr8 7027696 4.84% 6971500
chr9 6932023 5.01% 6877592
chr10 7583010 5.67% 7523514
chr11 8153050 6.04% 8089754
chr12 7602895 5.70% 7542445
chr13 3680299 3.22% 3650151
chr14 4849012 4.53% 4811150
chr15 5100482 5.00% 5060346
chr16 5243500 5.80% 5204317
chr17 7013143 8.42% 6959639
chr18 3228336 4.02% 3202442
chr19 6039219 10.30% 5995756
chr20 4227886 6.56% 4195102
chr21 1881228 4.03% 1866549
chr22 3173046 6.24% 3149314
chrX 3317110 2.13% 3290821
chrY 22700 0.04% 22518
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 154185964 1 716 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c13__mean_counts_contribs.bw 955.07 MB 5459cd7e8d4f7fdc14d784b9e3bd3370
genomic_resource.yaml 1.32 KB 9736ee86093e6a795c50157ada30036d
statistics/