Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c14_mean_counts_contribs float

liu2026Multiomics_Muscle_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c14_mean_counts_contribs [-0.0649, 0.122]
n
125,370,065
mean
0.000192
sd
0.00335

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1253700653.91% 124269103
chr1 11907060 4.78% 11803749
chr2 10304512 4.25% 10212977
chr3 7899665 3.98% 7828662
chr4 5546591 2.92% 5494729
chr5 6741447 3.71% 6681126
chr6 7639369 4.47% 7571136
chr7 6299516 3.95% 6243115
chr8 5916278 4.08% 5862932
chr9 5431864 3.92% 5384779
chr10 6356977 4.75% 6300847
chr11 6798368 5.03% 6739956
chr12 6228388 4.67% 6173931
chr13 3120204 2.73% 3091963
chr14 3931974 3.67% 3897792
chr15 4120390 4.04% 4084294
chr16 4162510 4.61% 4127852
chr17 5593610 6.72% 5546885
chr18 2458434 3.06% 2436554
chr19 4767330 8.13% 4728851
chr20 3302545 5.12% 3273932
chr21 1360529 2.91% 1348656
chr22 2388531 4.70% 2368277
chrX 3077061 1.97% 3049351
chrY 16912 0.03% 16757
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 124269103 1 926 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c14__mean_counts_contribs.bw 771.43 MB c0ad86d9d7abbf0ed9cf4ff15656ce54
genomic_resource.yaml 1.32 KB a373701a12603e457302fbb655dad81a
statistics/