Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c15_mean_counts_contribs float

liu2026Multiomics_Muscle_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c15_mean_counts_contribs [-0.0532, 0.126]
n
127,479,968
mean
0.000185
sd
0.00329

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1274799683.97% 126478571
chr1 12266676 4.93% 12171080
chr2 10238645 4.23% 10156807
chr3 8108779 4.09% 8043138
chr4 5513705 2.90% 5467599
chr5 6685775 3.68% 6631715
chr6 7584024 4.44% 7522943
chr7 6399826 4.02% 6348637
chr8 5595209 3.86% 5550087
chr9 5591573 4.04% 5547728
chr10 6451885 4.82% 6401255
chr11 6771711 5.01% 6719606
chr12 6300990 4.73% 6251195
chr13 3028441 2.65% 3003807
chr14 4134156 3.86% 4101757
chr15 4190818 4.11% 4157872
chr16 4304127 4.76% 4272592
chr17 6104888 7.33% 6059412
chr18 2412174 3.00% 2392578
chr19 5335518 9.10% 5298001
chr20 3470470 5.39% 3444062
chr21 1495976 3.20% 1483992
chr22 2578471 5.07% 2559484
chrX 2911903 1.87% 2889026
chrY 4228 0.01% 4198
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126478571 1 716 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c15__mean_counts_contribs.bw 784.22 MB 2adf22e3597d25db9f93d778b589af5c
genomic_resource.yaml 1.32 KB f2c212a5121ae5f5659c85be3ac7f813
statistics/