Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c16/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c16
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c16_mean_counts_contribs float

liu2026Multiomics_Muscle_c16_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c16_mean_counts_contribs [-0.0719, 0.146]
n
134,149,378
mean
0.000178
sd
0.00329

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1341493784.18% 133085890
chr1 13004037 5.22% 12902343
chr2 11001594 4.54% 10913058
chr3 8657518 4.37% 8587277
chr4 6048300 3.18% 5996471
chr5 6725830 3.70% 6671170
chr6 7853251 4.60% 7789582
chr7 6952282 4.36% 6895831
chr8 5969220 4.11% 5921077
chr9 5990230 4.33% 5943064
chr10 6568642 4.91% 6516576
chr11 7252579 5.37% 7196424
chr12 6417687 4.82% 6367043
chr13 3266272 2.86% 3239058
chr14 4237952 3.96% 4204631
chr15 4470088 4.38% 4434163
chr16 4416745 4.89% 4383896
chr17 6157249 7.40% 6111235
chr18 2698641 3.36% 2675954
chr19 5268972 8.99% 5230924
chr20 3502880 5.44% 3476097
chr21 1535542 3.29% 1523302
chr22 2760724 5.43% 2740327
chrX 3368526 2.16% 3341936
chrY 24617 0.04% 24451
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133085890 1 947 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c16__mean_counts_contribs.bw 824.22 MB ad0a280b64d3120270f0c20c8512df3e
genomic_resource.yaml 1.32 KB 12c5c462a2b74ce8338a199efbc1cd8d
statistics/