Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c17_mean_counts_contribs float

liu2026Multiomics_Muscle_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c17_mean_counts_contribs [-0.0207, 0.0582]
n
58,989,619
mean
-1.16e-05
sd
0.00249

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 589896191.84% 58403471
chr1 5960667 2.39% 5901179
chr2 4560073 1.88% 4513881
chr3 3636443 1.83% 3599251
chr4 2458092 1.29% 2432331
chr5 2847442 1.57% 2818354
chr6 3496253 2.05% 3461103
chr7 2954186 1.85% 2924668
chr8 2512715 1.73% 2487204
chr9 2524917 1.82% 2499752
chr10 2758877 2.06% 2731378
chr11 3294518 2.44% 3262256
chr12 2926153 2.20% 2896988
chr13 1258027 1.10% 1245560
chr14 1942242 1.81% 1923046
chr15 1852505 1.82% 1834213
chr16 2119639 2.35% 2099893
chr17 3013657 3.62% 2984446
chr18 1091771 1.36% 1080790
chr19 3094970 5.28% 3066517
chr20 1522356 2.36% 1507562
chr21 597936 1.28% 591953
chr22 1259774 2.48% 1247470
chrX 1277694 0.82% 1265238
chrY 28712 0.05% 28438
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58403471 1 365 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c17__mean_counts_contribs.bw 362.06 MB 837f332ff5990a8dddcb60ddd321111c
genomic_resource.yaml 1.32 KB 1332948c74c026f192052145d39735da
statistics/