Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c18/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c18
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c18
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c18_mean_counts_contribs float

liu2026Multiomics_Muscle_c18_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c18_mean_counts_contribs [-0.0435, 0.113]
n
116,033,966
mean
0.000146
sd
0.00314

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1160339663.62% 115138942
chr1 11248222 4.52% 11161318
chr2 9464853 3.91% 9390129
chr3 7533780 3.80% 7474331
chr4 5320425 2.80% 5277363
chr5 5931077 3.27% 5884585
chr6 6915918 4.05% 6861864
chr7 5896593 3.70% 5850050
chr8 5118412 3.53% 5078502
chr9 5090192 3.68% 5051433
chr10 5797303 4.33% 5751708
chr11 6262046 4.64% 6214814
chr12 5801810 4.35% 5757241
chr13 2801174 2.45% 2779018
chr14 3706784 3.46% 3678493
chr15 3768450 3.69% 3739596
chr16 3878005 4.29% 3849729
chr17 5325895 6.40% 5286794
chr18 2285041 2.84% 2266751
chr19 4509208 7.69% 4477895
chr20 2955889 4.59% 2933478
chr21 1266679 2.71% 1256686
chr22 2314481 4.55% 2297412
chrX 2839615 1.82% 2817657
chrY 2114 <0.01% 2095
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 115138942 1 998 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c18__mean_counts_contribs.bw 713.21 MB 7b40bfd8a4db5c960570e7a8a5d9594f
genomic_resource.yaml 1.32 KB f518a66eec3c8f5addcd99496ebddddf
statistics/