Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c19/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c19
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c19
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c19_mean_counts_contribs float

liu2026Multiomics_Muscle_c19_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c19_mean_counts_contribs [-0.0406, 0.0697]
n
95,418,460
mean
5.74e-05
sd
0.00256

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 954184602.97% 94487565
chr1 8725075 3.50% 8640045
chr2 7810203 3.22% 7732485
chr3 6195090 3.12% 6132713
chr4 4622289 2.43% 4574788
chr5 5368807 2.96% 5315469
chr6 5646654 3.31% 5590743
chr7 5078100 3.19% 5027802
chr8 4377656 3.02% 4334453
chr9 3985764 2.88% 3947501
chr10 4686475 3.50% 4639568
chr11 5146000 3.81% 5096268
chr12 4612013 3.46% 4567397
chr13 2434114 2.13% 2409632
chr14 2878262 2.69% 2850533
chr15 3117763 3.06% 3087408
chr16 3125517 3.46% 3096670
chr17 4164063 5.00% 4125037
chr18 2048567 2.55% 2027937
chr19 3761827 6.42% 3729306
chr20 2474530 3.84% 2451311
chr21 1045899 2.24% 1035781
chr22 1686664 3.32% 1671054
chrX 2427128 1.56% 2403664
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94487565 1 998 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c19__mean_counts_contribs.bw 586.74 MB 3da1b208d6a2adc5f2fcb52e13c706bc
genomic_resource.yaml 1.32 KB 35d63962d9f8d5513687325f689c8ae5
statistics/