Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c2_mean_counts_contribs float

liu2026Multiomics_Muscle_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c2_mean_counts_contribs [-0.0543, 0.166]
n
165,103,320
mean
0.000247
sd
0.00345

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1651033205.14% 163924821
chr1 16001225 6.43% 15887206
chr2 13628056 5.63% 13529315
chr3 10548075 5.32% 10470993
chr4 7533216 3.96% 7474479
chr5 8648334 4.76% 8585094
chr6 9879715 5.78% 9807549
chr7 8300138 5.21% 8239171
chr8 7373370 5.08% 7319418
chr9 7314878 5.29% 7262828
chr10 8419192 6.29% 8359945
chr11 8929520 6.61% 8867638
chr12 7992754 6.00% 7936230
chr13 4055411 3.55% 4025186
chr14 5179968 4.84% 5143074
chr15 5391262 5.29% 5352792
chr16 5432221 6.01% 5396418
chr17 7467564 8.97% 7417129
chr18 3341737 4.16% 3316502
chr19 6206756 10.59% 6168052
chr20 4421628 6.86% 4391132
chr21 1894258 4.06% 1879411
chr22 3425085 6.74% 3402509
chrX 3682071 2.36% 3656101
chrY 36886 0.06% 36649
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 163924821 1 974 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c2__mean_counts_contribs.bw 1015.55 MB 302a64303cf1c5fa16af7540b83b8099
genomic_resource.yaml 1.31 KB c1ef3b07702088819ce632ac32667d77
statistics/