Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c20/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c20
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c20
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c20_mean_counts_contribs float

liu2026Multiomics_Muscle_c20_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c20_mean_counts_contribs [-0.0333, 0.135]
n
74,347,945
mean
1.96e-05
sd
0.00258

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 743479452.32% 73632949
chr1 7400926 2.97% 7329839
chr2 5715503 2.36% 5659623
chr3 4611752 2.33% 4566533
chr4 3252612 1.71% 3220113
chr5 3759890 2.07% 3723064
chr6 4448671 2.60% 4405478
chr7 3714279 2.33% 3678267
chr8 3142445 2.17% 3111740
chr9 3237286 2.34% 3206126
chr10 3487994 2.61% 3454453
chr11 4178138 3.09% 4137916
chr12 3744328 2.81% 3708189
chr13 1641572 1.44% 1625732
chr14 2357444 2.20% 2335045
chr15 2328563 2.28% 2305983
chr16 2609115 2.89% 2585267
chr17 3564904 4.28% 3531928
chr18 1470931 1.83% 1455805
chr19 3807877 6.50% 3774065
chr20 1886422 2.93% 1868337
chr21 881074 1.89% 872409
chr22 1547446 3.05% 1532764
chrX 1513864 0.97% 1499749
chrY 44909 0.08% 44524
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73632949 1 716 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c20__mean_counts_contribs.bw 456.08 MB bf13b44e50665a31e201a0c8f1b813e9
genomic_resource.yaml 1.32 KB ed048413e202fe12a8ad1c66dc8f2e3c
statistics/