Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c21/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c21
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c21
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c21_mean_counts_contribs float

liu2026Multiomics_Muscle_c21_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c21_mean_counts_contribs [-0.0333, 0.0872]
n
95,521,734
mean
2.87e-05
sd
0.00264

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 955217342.98% 94529853
chr1 8975713 3.61% 8883138
chr2 7760944 3.20% 7678984
chr3 6417375 3.24% 6349149
chr4 4602201 2.42% 4551633
chr5 5221225 2.88% 5165977
chr6 5755417 3.37% 5695421
chr7 4896357 3.07% 4844557
chr8 4412625 3.04% 4365965
chr9 4029510 2.91% 3988209
chr10 4462014 3.33% 4415635
chr11 5043565 3.73% 4992014
chr12 4756130 3.57% 4706558
chr13 2420848 2.12% 2394896
chr14 3005659 2.81% 2974686
chr15 3040744 2.98% 3008973
chr16 3251250 3.60% 3219444
chr17 4129163 4.96% 4087965
chr18 2089007 2.60% 2067106
chr19 3674022 6.27% 3639683
chr20 2448890 3.80% 2424282
chr21 1033361 2.21% 1022470
chr22 1713731 3.37% 1696782
chrX 2355577 1.51% 2330171
chrY 26406 0.05% 26155
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94529853 1 851 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c21__mean_counts_contribs.bw 586.83 MB 85641ce2fc71a19187af30a1e3408492
genomic_resource.yaml 1.32 KB f6af3e33f37349c31dcc90058624ddd2
statistics/