Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c3_mean_counts_contribs float

liu2026Multiomics_Muscle_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c3_mean_counts_contribs [-0.173, 0.21]
n
194,407,344
mean
0.000408
sd
0.00447

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1944073446.06% 193176789
chr1 17863052 7.18% 17750059
chr2 16314611 6.74% 16211143
chr3 13004829 6.56% 12921231
chr4 9449131 4.97% 9386185
chr5 11387317 6.27% 11313368
chr6 11809768 6.91% 11733959
chr7 9968360 6.26% 9904167
chr8 9248049 6.37% 9188492
chr9 8664607 6.26% 8609931
chr10 10113168 7.56% 10049732
chr11 9874633 7.31% 9813159
chr12 9350841 7.02% 9291416
chr13 5163974 4.52% 5130372
chr14 6100030 5.70% 6061721
chr15 6264052 6.14% 6224211
chr16 5921473 6.55% 5885805
chr17 7943387 9.54% 7895370
chr18 4334576 5.39% 4307285
chr19 6036701 10.30% 6001289
chr20 5394787 8.37% 5361384
chr21 2327576 4.98% 2312890
chr22 3319415 6.53% 3299370
chrX 4508954 2.89% 4480477
chrY 44053 0.08% 43773
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 193176789 1 921 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c3__mean_counts_contribs.bw 1.17 GB dfb48423a8abe4db9db5890aa00a2f2c
genomic_resource.yaml 1.31 KB 7cd33d4fde8e2b22fdf2da2b290d3aac
statistics/