Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c4_mean_counts_contribs float

liu2026Multiomics_Muscle_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Muscle_c4_mean_counts_contribs [-0.0942, 0.177]
n
170,966,138
mean
0.000338
sd
0.00409

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1709661385.33% 169946543
chr1 15483285 6.22% 15390694
chr2 14270547 5.89% 14185135
chr3 11397866 5.75% 11328851
chr4 8447241 4.44% 8393688
chr5 9857096 5.43% 9798602
chr6 10608980 6.21% 10545234
chr7 8671946 5.44% 8618999
chr8 8329119 5.74% 8278565
chr9 7383134 5.33% 7340064
chr10 8773825 6.56% 8721527
chr11 8751284 6.48% 8700403
chr12 8266555 6.20% 8217647
chr13 4744634 4.15% 4715541
chr14 5450441 5.09% 5418160
chr15 5423755 5.32% 5391696
chr16 5095594 5.64% 5066288
chr17 6771238 8.13% 6732017
chr18 3776850 4.70% 3753303
chr19 5458433 9.31% 5428330
chr20 4255404 6.60% 4230670
chr21 2030914 4.35% 2018653
chr22 2923733 5.75% 2906942
chrX 4776366 3.06% 4747758
chrY 17898 0.03% 17776
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 169946543 1 973 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c4__mean_counts_contribs.bw 1.03 GB 39c58e761a42e411eca4d6782f94a5e7
genomic_resource.yaml 1.31 KB 3842bd1b1e150779c9dacd5ed7ee6790
statistics/