Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Muscle/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Muscle for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Muscle_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Muscle
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Muscle_c5_mean_counts_contribs float

liu2026Multiomics_Muscle_c5_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Muscle_c5_mean_counts_contribs [-0.0732, 0.181]
n
218,727,222
mean
0.000342
sd
0.00396

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2187272226.82% 217321960
chr1 20575376 8.26% 20444258
chr2 18293101 7.55% 18174304
chr3 14094645 7.11% 14001964
chr4 10556590 5.55% 10483267
chr5 11890609 6.55% 11812655
chr6 13088795 7.66% 13003595
chr7 11253992 7.06% 11179643
chr8 9953208 6.86% 9888355
chr9 9524333 6.88% 9463617
chr10 10981215 8.21% 10910936
chr11 11529670 8.54% 11457057
chr12 10631414 7.98% 10563360
chr13 5712150 4.99% 5674324
chr14 6846331 6.40% 6802593
chr15 6956698 6.82% 6912329
chr16 7133297 7.90% 7089469
chr17 9538026 11.46% 9479726
chr18 4750962 5.91% 4719475
chr19 7225330 12.33% 7183955
chr20 5988975 9.29% 5951824
chr21 2601692 5.57% 2584462
chr22 4294281 8.45% 4268380
chrX 5267454 3.38% 5233555
chrY 39078 0.07% 38857
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 217321960 1 985 1.01 1
global segment-length histogram

Files

Filename Size md5
Muscle_c5__mean_counts_contribs.bw 1.31 GB 2a2c70b748721d3242993f270aa18b5f
genomic_resource.yaml 1.31 KB 4ff6d46ad1fdda0ef9eb185d0c9dc03f
statistics/